- Titel
- Analysis of Unusual Eukaryotic tRNA Nucleotidyltransferases and Establishment of a High-Throughput Sequencing Method for Mature tRNAs
- Zitierfähige Url:
- https://nbn-resolving.org/urn:nbn:de:bsz:15-qucosa2-716851
- Datum der Einreichung
- 26.05.2020
- Datum der Verteidigung
- 24.07.2020
- Abstract (EN)
- Transfer RNA nucleotidyltransferases (CCA-adding enzymes) are important enzymes, which catalyze the attachment of a CCA triplet to the 3‘ end of tRNAs, an essential requirement for subsequent aminoacylation. These special enzymes function in a fascinating manner without a nucleic acid template. Furthermore, a substrate affinity switch from CTP to ATP is fulfilled with high specificity and the reaction is precisely terminated after addition of the terminal ATP. In some bacteria, the CCA-adding activity is divided into two enzymes: a CC- and an A-adding enzyme. This diversity that was long only assigned to Bacteria. However, the growing number of eukaryotic genomes allowed for deep bioinformatic investigation, revealing several eukaryotic organisms with an unusual amount of tRNA nucleotidyltransferase genes. In the present work, the function of several tRNA nucleotidyltransferases found in the genome of certain fungi, amoeba and choanoflagellates was investigated. For the tRNA nucleotidyltrans-ferases detected in Salpingoeca rosetta and Schizosaccharomyces pombe, a divided activity similar to bacterial CC- and A-adding enzymes could be observed. Additionally, in the amoeba Dictyostelium discoideum two bona fide CCA-adding enzymes were found, which are inversely regulated during the developmental cycle. In the amoeba Acanthamoeba castellanii, four different tRNA nucleotidyltransferases with different activities, localization and evolutionary origin were identified. Moreover, a method for the precise analysis of mature tRNAs by high-throughput sequencing was established as well. This method includes the specific ligation of a hairpin adapter molecule, which complementarily and highly efficiently binds to tRNAs with a 3’-CCA end resulting in a very specific preparation of tRNAs for high-throughput sequencing. It also allows for analysis of some modified bases usually found in tRNAs, which was used to analyze the alteration of certain tRNA modifications during the developmental cycle of D. discoideum.
- Forschungsdatenverweis
- LOTTE-seq (Long hairpin oligonucleotide based tRNA high-throughput sequencing): Specific selection of tRNAs with 3’-CCA end for high-throughput sequencing
DOI: https://doi.org/10.1080/15476286.2019.1664250
Link: https://www.tandfonline.com/doi/abs/10.1080/15476286.2019.1664250 - Divergent evolution of eukaryotic CC- and A-adding enzymes
DOI: https://doi.org/10.3390/ijms21020462
Link: https://www.mdpi.com/1422-0067/21/2/462 - Unusual occurrence of two bona-fide CCA-adding enzymes in Dictyostelium discoideum
DOI: https://doi.org/10.3390/ijms21155210
Link: https://www.mdpi.com/1422-0067/21/15/5210 - Freie Schlagwörter (EN)
- tRNA nucleotidyltransferases, tRNA, highthroughput sequencing
- Klassifikation (DDC)
- 570
- Den akademischen Grad verleihende / prüfende Institution
- Universität Leipzig, Leipzig
- Version / Begutachtungsstatus
- angenommene Version / Postprint / Autorenversion
- URN Qucosa
- urn:nbn:de:bsz:15-qucosa2-716851
- Veröffentlichungsdatum Qucosa
- 10.08.2020
- Dokumenttyp
- Dissertation
- Sprache des Dokumentes
- Englisch
- Deutsch
- Lizenz / Rechtehinweis
CC BY 4.0- Inhaltsverzeichnis
Erklärung der Selbstständigkeit II List of Abbreviations V Bibliografische Darstellung VII Zusammenfassung 1 Summary 6 Chapter I 11 1.1. Transfer RNAs 12 1.1.1. Structure and maturation of transfer ribonucleic acids (tRNAs) 12 1.1.2. tRNAs as regulatory molecules and their role in diseases 13 1.1.3. Sequencing of tRNAs – a special challenge 14 1.1.4. The 3’-CCA end of tRNAs 15 1.2. tRNA nucleotidyltransferases 16 1.2.1. Classification and biological roles 16 1.2.2. Class II tRNA nucleotidyltransferases 18 1.2.3. Enzymes with split activity – bacterial CC- and A-adding enzymes 19 1.2.4. Two types of eukaryotic tRNA nucleotidyltransferases 21 1.2.5. Distribution of eukaryotic organisms with multiple tRNA nucleotidyltransferase genes 22 1.3. Aim of the work 23 1.4. References 25 Chapter II 33 Chapter III 44 Chapter IV 75 Chapter V 100 Chapter VI 119 Publications and Presentations IX Author Contribution Statement XI Danksagung XVI